Is there any biological evidence to support the Freudian notions of Id, ego, and super-ego?

I ask because last year I concluded a two and a half year project exploring the extent to which Id can overcome super-ego. Although this sits outside my field (English Literature) I'm interested in the way in which humans are able to operate outside the bounds of their own ethical frameworks without regard for consequences.

Put shortly: no. 

Many of Freud's ideas regarding the mind were simply speculation. the ego-id-superego model is one such speculation. Many people take this model to be factual despite a lack of evidence that it is true. 

It is true that different structures in the brain have different functions. For example the limbic system is involved with emotion response and the frontal lobe is involved in higher reasoning like making moral decisions or predicting the consequences of actions. Different parts of the brain do interact with one another and this interaction determines behavior. 

Some people try to match Freuds model of the mind to the function of various brain regions, but this is a post hoc analysis.  
Rather than trying to fit data into a nineteenth century model of the mind it makes more sense to construct our model of the mind from  the available data. 

Unfortunately a large portion of the mental health field has yet to adopt Evidence Based Psychology. Evidence Based Psychology accepts only ideas with empirical evidence to support them.